I have decided that I will no longer be supporting or actively developing Custom Post Permalinks. Part of me regrets releasing this plugin in the first place. The problem with making a really simple to use plugin that extends a really really hard to understand API is that people who don’t know what they’re doing will be encouraged to act as if they do.
If I had a dollar for every time somebody tried to give their CPT top level permalinks (just like pages) and then claimed my plugin broke their site, I wouldn’t have to pay for coffee for at least a month.
The plugin didn’t break your site. You did.
Anyway, I have no time to spend on support requests; I will not be maintaining the plugin or updating it in the future. Family life and work are both keeping me too busy for that.
If you’re interested in taking over the repo for the plugin, let me know in the comments.